#!/usr/bin/env python """ Created : 21-06-2018 Last Modified : Fri 22 Jun 2018 06:46:45 PM EDT Created By : Enrique D. Angola """ import json import scipy.io as spio import pandas as pd def loadmat(filename): ''' this function should be called instead of direct spio.loadmat as it cures the problem of not properly recovering python dictionaries from mat files. It calls the function check keys to cure all entries which are still mat-objects ''' data = spio.loadmat(filename, struct_as_record=False, squeeze_me=True) return _check_keys(data) def _check_keys(dict): ''' checks if entries in dictionary are mat-objects. If yes todict is called to change them to nested dictionaries ''' for key in dict: if isinstance(dict[key], spio.matlab.mio5_params.mat_struct): dict[key] = _todict(dict[key]) return dict def _todict(matobj): ''' A recursive function which constructs from matobjects nested dictionaries ''' dict = {} for strg in matobj._fieldnames: elem = matobj.__dict__[strg] if isinstance(elem, spio.matlab.mio5_params.mat_struct): dict[strg] = _todict(elem) else: dict[strg] = elem return dict def mat2json(filename=None,filepath = ''): """ Converts .mat file to .json and writes new file Parameters ---------- filename: Str path/filename of .mat file filepath: Str path to write converted file Returns ------- None Examples -------- >>> mat2json(blah blah) """ matlabFile = loadmat(filename) #pop all those dumb fields that don't let you jsonize file matlabFile.pop('__header__') matlabFile.pop('__version__') matlabFile.pop('__globals__') #jsonize the file - orientation is 'index' matlabFile = pd.Series(matlabFile).to_json() with open(filepath+filename[0:-4]+'.json','w') as f: f.write(matlabFile) mat2json('test.mat')